1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactctcggatttcttacgtggagtggccgtgctccaacttccaaggcattgctcaaacatagagcatggttaattagtttttgggacttttttt...
species | Oryza sativa |
transcript | LOC_Os04g52640.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT AAATTTATCACATAATTTTTTGGTAGGGACTATACCATCGTTCATTGEST: gi|88389754|gb|CI626523.1|CI626523
genomic: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactc ... cttgtttcagAAATTTATCACATAATTTTTTGGTAGGGACTATACCATCGTTCATTG
EST: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT AAATTTATCACATAATTTTTTGGTAGGGACTATANCATCEST: gi|88573017|gb|CI664588.1|CI664588
genomic: ACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactc ... cttgtttcagAAATTTATCACATAATTTTTTGGTAGGGACTATACCATC
EST: CTGGCCAGATACCAGGAGAGCTGNCGGAAC-TCACACATTCAACCCATCT AAATTTATCACATAATTTTTTGGTAGGGACTATACCATCGTCCATTGGGGA
genomic: CTGGCCAGATACCAGGAGAGCTG-CGGAACCTCACACATTTAACCCATCTgtatgaactc ... cttgtttcagAAATTTATCACATAATTTTTTGGTAGGGACTATACCATCGTTCATTGGGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCTgtatgaactctcggatttcttacgtggagtggccgtgctccaacttccaaggcattgctcaaacatagagcatggttaattagtttttgggacttttttt
- - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - AGCTGC