1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' | 20 5' 3' |
21 5' 3' | 22 5' 3' | 23 5' 3' |
gtaagtgtacacgcacacgaggtgttcgacggattgcctagcctgcaatgcgcgcaccttcttgcgctagtgtctctgaccattccaactgaaaagtgttgatcgtgtgattcagttatttttcctcttatctgatgagaaggcggagctaacacattacgtgctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT
species | Oryza sativa |
transcript | LOC_Os04g52640.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGGGGAAEST: gi|88368820|gb|CI649411.1|CI649411
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAAEST: gi|88288391|gb|CI661596.1|CI661596
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAAEST: gi|88389754|gb|CI626523.1|CI626523
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGAAAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAAEST: gi|88410203|gb|CI575801.1|CI575801
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAAEST: gi|88380887|gb|CI634912.1|CI634912
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAAEST: gi|88326454|gb|CI659885.1|CI659885
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAAEST: gi|88573017|gb|CI664588.1|CI664588
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
EST: AAGTGCGACTGCTCCGACCACAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGNCGGAEST: gi|88396823|gb|CI577972.1|CI577972
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTG-CGGA
EST: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCT GAAGATATATGACAAGGATGCAACTGGCCAGATAC-AGGAGAGCTGCGGAA
genomic: AAGTGCGACTGCTCCGACCAGAACAACACAGTGTGCCACATCACCGGGCTgtaagtgtac ... gctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAA
atttttcctcttatctgatgagaaggcggagctaacacattacgtgctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT
tgctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtgtacacgcacacgaggtgttcgacggattgcctagcctgcaatgcgcgcaccttcttgcgctagtgtctctgaccattccaactgaaaagtgttgatcgtgtgattcagttatttttcctcttatctgatgagaaggcggagctaacacattacgtgctgacgcagGAAGATATATGACAAGGATGCAACTGGCCAGATACCAGGAGAGCTGCGGAACCTCACACATTTAACCCATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC