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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtttcctagccgtccgatctgctctgttccgggcaatcggacggtcgaggagcagccgaccgtttgctcataagttctctcttgacgtggcgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAACACCACCGGCGATCCGTGCAGCGGCGCGGCGACGGACAGCACCGACAT

Basic information

species Oryza sativa
transcript LOC_Os04g52640.1
intron # 1
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88733416|gb|CI756593.1|CI756593
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88360881|gb|CI625187.1|CI625187
EST:     TTGCGTCAGGCTCAGAAAGCACCGACGGCCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: TTGC-TCAGGCTCAGAAAGCACCGACGG-CGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88368820|gb|CI649411.1|CI649411
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88589472|gb|CI707355.1|CI707355
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88288391|gb|CI661596.1|CI661596
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88401383|gb|CI585939.1|CI585939
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCACAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88389754|gb|CI626523.1|CI626523
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88369657|gb|CI582852.1|CI582852
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGACAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88410203|gb|CI575801.1|CI575801
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88421038|gb|CI566879.1|CI566879
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88380887|gb|CI634912.1|CI634912
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88326454|gb|CI659885.1|CI659885
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88765430|gb|CI774524.1|CI774524
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88425212|gb|CI564729.1|CI564729
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
EST: gi|88396823|gb|CI577972.1|CI577972
EST:     GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGG                         CGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA
genomic: GGTTGCTCAGGCTCAGAAAGCACCGACGGCGACGACTGATCGGATTGAGGgtagaagatt ... cgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cgaggagcagccgaccgtttgctcataagttctctcttgacgtggcgttttgcagCGGAGGCGCTGAAGGCTGTGTTCGAGAAGCTCGACCAGAAGGCGGAATGGAACACCACCGGCGATCCGTGCAGCGGCGCGGCGACGGACAGCACCGACAT
                                  tcttgac  putative branch site (score: 3)
                        ataagtt  TA-rich tract