1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagatactgcccttatggaaacattttgtcgcatgctctactctttcattgtataagtaatttattcctactgtgataaaggttgatattttgtt...
species | Oryza sativa |
transcript | LOC_Os04g45190.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGEST: gi|88520888|gb|CI448542.1|CI448542
genomic: AAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
EST: AAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGEST: gi|88688963|gb|CI732539.1|CI732539
genomic: AAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
EST: AAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGEST: gi|27547307|gb|CA765509.2|CA765509
genomic: AAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
EST: AAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGEST: gi|86893296|gb|CI313417.1|CI313417
genomic: AAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
EST: GAAAGAAACTCTCCTATTCAGCAGAACAATAATCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGEST: gi|25803588|gb|CA759549.1|CA759549
genomic: GAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
EST: AAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGEST: gi|25807588|gb|CA763549.1|CA763549
genomic: AAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
EST: AAGAAAGAAACTTTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTGEST: gi|86600861|gb|CI356618.1|CI356618
genomic: AAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
EST: CTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAAGAATGGTGGTTTCCACTTTTGEST: gi|88470081|gb|CI407352.1|CI407352
genomic: CTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGC-AGAATGGTGGTTTCC-CTTTTG
EST: GAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATG GACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTT
genomic: GAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagat ... atcttaacagGACCTTGTGAGGAGGGAAATTAGCAAGCAGAATGGTGGTTTCCCTTTTGTG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACATCTGCTTTGATTTCAAGATTGACAGAAGAAAGAAACTCTGCTATTCAGCAGAACAATAAGCTTCTCGAGGAGATGgttagtagatactgcccttatggaaacattttgtcgcatgctctactctttcattgtataagtaatttattcctactgtgataaaggttgatattttgtt
- - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG