1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGgtagttcatgttctaatgtctatcagatggttgattcttgattatgttgcttgatgtttgtttctaacttcctagttcctatgatgccaacatgtgtaccttttctag
species | Oryza sativa |
transcript | LOC_Os04g45190.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: GCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATG TTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCEST: gi|117238779|gb|CT842528.1|CT842528
genomic: GCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGgtagttcatg ... ccttttctagTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTC
EST: GCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATG TTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTCEST: gi|88317555|gb|CI672132.1|CI672132
genomic: GCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGgtagttcatg ... ccttttctagTTTAACAAAGGATCAGGTAATGTGGTGGATGAGAGGAAGTTGAAGGTTGTC
EST: CGTCGTGGTGACTGAAGGCACAACAACCCAAGGATGTCACTGGAGAGATG TTCAACAAAGGATCAGGTAATEST: gi|88330878|gb|CI636890.1|CI636890
genomic: CGTTGTGGTGACTGAAGGCACAACAACC-AAGGATGTCACTGGAGAGATGgtagttcatg ... ccttttctagTTTAACAAAGGATCAGGTAAT
EST: GCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATG TTTAACAAAGGATCAGGTAATGTGG
genomic: GCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGgtagttcatg ... ccttttctagTTTAACAAAGGATCAGGTAATGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGATGTCACTGGAGAGATGgtagttcatgttctaatgtctatcagatggttgattcttgattatgttgcttgatgtttgtttctaacttcctagttcctatgatgccaacatgtgtaccttttctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG