1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gttatgctcaattctcatctccttcatgcaaaacgttgggatattttcctcgtcctgttatctgtgtgcaaaaaattgacagttctctgcatttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGA
species | Oryza sativa |
transcript | LOC_Os04g45190.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAGTCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCG TAACAATGCAAGCCCAACGGGAGGCACEST: gi|27547307|gb|CA765509.2|CA765509
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAGCCCAACGGGAGGCAC
EST: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCG TAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAEST: gi|428790|gb|D24946.1|D24946
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACA
EST: CAGGNCGAACAGTGGCATTGTGCCGCCACGGTNCACCAGCGATGTCATCG TAACAATGCAAGEST: gi|117238779|gb|CT842528.1|CT842528
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAG
EST: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCG TAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAEST: gi|88317555|gb|CI672132.1|CI672132
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACA
EST: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCG TAANAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAEST: gi|88330878|gb|CI636890.1|CI636890
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACA
EST: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCG TAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAEST: gi|58606663|gb|CK034696.1|CK034696
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACA
EST: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCG TAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAEST: gi|163929427|gb|EG713396.1|EG713396
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACA
EST: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCG TAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACA
genomic: CAGGCCGAACAGTGGCATTGTGCCGCCACGGTCCACCAGCGATGTCATCGgttatgctca ... atttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACA
ttcctcgtcctgttatctgtgtgcaaaaaattgacagttctctgcatttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGA
aattgac putative branch site (score: 3)
ttctctgcatttcctt putative PPT
aaaaaattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttatgctcaattctcatctccttcatgcaaaacgttgggatattttcctcgtcctgttatctgtgtgcaaaaaattgacagttctctgcatttccttagTAACAATGCAAGCCCAACGGGAGGCACCAGCAGACATGCAGTGCAAAGACAAGTTTCTAGTGCAGAGCGTTGTGGTGACTGAAGGCACAACAACCAAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG