1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...catgtcatgaaatgcaatctcatgtagtatatgtacagtatacactttgataagctgttggcagaagataatgctggttgctttgcatgaacttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGCCACTCGGACGGCCATGAAAGGGCAAATAAAGCTCGAAAAGTCGATGCT
species | Oryza sativa |
transcript | LOC_Os04g42010.1 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACCATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|88843313|gb|CI372213.1|CI372213
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCCEST: gi|33798570|gb|CF325143.1|CF325143
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86871953|gb|CI332125.1|CI332125
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGCCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGTTCCEST: gi|88993134|gb|CI108762.1|CI108762
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|89197113|gb|CI021953.1|CI021953
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|89193612|gb|CI116245.1|CI116245
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGTCGTTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86431392|gb|CI085003.1|CI085003
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86862127|gb|CI330697.1|CI330697
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86603303|gb|CI112063.1|CI112063
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGCCGGTCAAGGAAAATATAGAGACNATAGAAGTAACAGGGGAAG GGACTGGAAGGATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|88256528|gb|CI358916.1|CI358916
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86427996|gb|CI073093.1|CI073093
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|88907105|gb|CI089899.1|CI089899
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86432658|gb|CI086269.1|CI086269
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86430286|gb|CI082709.1|CI082709
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|88518308|gb|CI445962.1|CI445962
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|88837163|gb|CI078523.1|CI078523
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86430372|gb|CI082795.1|CI082795
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACTATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGTCGTGGTCEST: gi|88376216|gb|CI533118.1|CI533118
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAG-CGTGGTC
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|89192806|gb|CI050104.1|CI050104
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|33799670|gb|CF325698.1|CF325698
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86842260|gb|CI335194.1|CI335194
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCCEST: gi|88218676|gb|CI218525.1|CI218525
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATTACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|86425885|gb|CI070982.1|CI070982
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|218478715|gb|FG955118.1|FG955118
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGEST: gi|88837171|gb|CI078531.1|CI078531
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
EST: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAG GGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
genomic: ATAAAGGGCGGTCAAGGAAAATATAGAGACAATAGAAGTAACAGGGGAAGgtatttcatt ... acttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCG
tttgataagctgttggcagaagataatgctggttgctttgcatgaacttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGCCACTCGGACGGCCATGAAAGGGCAAATAAAGCTCGAAAAGTCGATGCT
ctttgat putative branch site (score: 8)
cttttct putative PPT
aagataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catgtcatgaaatgcaatctcatgtagtatatgtacagtatacactttgataagctgttggcagaagataatgctggttgctttgcatgaacttttctagGGACTGGAAGAATAACAGGGGCGGGAGGCACTTCGGTGGGAAGCGTGGTCGCCACTCGGACGGCCATGAAAGGGCAAATAAAGCTCGAAAAGTCGATGCT
- tgtcatg
- - - - -aaatgca
- - - - - - - - - - catgtag
- - - - - - - - - - - - - - atatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - -gctgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gcagaag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgctg