1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gctttctaatttctacaagtaaacataatctcttttatcagacaacttatgctgattcaaaactctttcttttttattgttccattttccccccttgaagTATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGATTCTAAGGCAGCTGAAAAGGCCCGTGCACTTGCGGCTATTTCAGATGAAG
species | Oryza sativa |
transcript | LOC_Os04g42010.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: ATTCGGCACAGTGCGG TATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGATEST: gi|89192806|gb|CI050104.1|CI050104
genomic: ATTCGGCACAGTGCGGgtaacttttc ... ccccttgaagTATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGAT
EST: ATTCGGCACAGTGCGG TATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGATEST: gi|86425885|gb|CI070982.1|CI070982
genomic: ATTCGGCACAGTGCGGgtaacttttc ... ccccttgaagTATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGAT
EST: ATTCGGCACAGTGCGG TATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGATEST: gi|218478715|gb|FG955118.1|FG955118
genomic: ATTCGGCACAGTGCGGgtaacttttc ... ccccttgaagTATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGAT
EST: TTTCAAGGGAAGATTTTAAAGAAGAATTTGGCAAATTCGGCACAGTGCGG TATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGAT
genomic: TTTCAAGGGAAGATTTTAAAGAAGAATTTGGCAAATTCGGCACAGTGCGGgtaacttttc ... ccccttgaagTATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGAT
cttatgctgattcaaaactctttcttttttattgttccattttccccccttgaagTATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGATTCTAAGGCAGCTGAAAAGGCCCGTGCACTTGCGGCTATTTCAGATGAAG
tgctgat putative branch site (score: 12)
ctctttcttttttatt putative PPT
tttcttttttattgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctttctaatttctacaagtaaacataatctcttttatcagacaacttatgctgattcaaaactctttcttttttattgttccattttccccccttgaagTATGTGGACTTCAGCATAGGGGAGGATTCAGGATACATTCGGTTCGAGGATTCTAAGGCAGCTGAAAAGGCCCGTGCACTTGCGGCTATTTCAGATGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - -caagtaaa
- - - - - - - - - - - - - - - - - - - -agacaac
- - - - - - - - - - - - - - - - - - - - - - - - -tgctgat