1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaaggaagttattttgtcacatacgtgcaccattacacagtcgaagttcatgtgttgacagcaaaagaggcttaacttcattctgtttagattttttagagagaaatttgttgctcatattgacaatgtcagcttaaattccaataccatgtttttttttcgccccctttaactgtttttttgacagGGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGGAGCAAGTGGACTCTAGGACAATTGCTGCATCACCATTTCCTTACAATGT
species | Oryza sativa |
transcript | LOC_Os04g42010.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGTTGCCGAGGTGCTGCGGCGTTCCTCGGCCCTCCGTGTCACCGAGGATG GGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGGEST: gi|88726276|gb|CI749931.1|CI749931
genomic: CGTTGCCGAGGTGCTGCGGCGTTCCTCGGCCCTCCGTGTCACCGAGGATGgtaaggaagt ... tttttgacagGGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGG
EST: CGTTGCCGAGGTGCTGCGGCGTTCCTCGGCCCTCCGTGTCACCGAGGATG GGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGGEST: gi|5003896|gb|AU069045.1|AU069045
genomic: CGTTGCCGAGGTGCTGCGGCGTTCCTCGGCCCTCCGTGTCACCGAGGATGgtaaggaagt ... tttttgacagGGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGG
EST: CGTTGCCGAGGTGCTGCGGCGTTCCTCGGCCCTCCGTGTCACCGAGGATG GGAAGAAAGTTGGCAGATCAATTGAGTTTTCGAAACTGGATGAGATCATGG
genomic: CGTTGCCGAGGTGCTGCGGCGTTCCTCGGCCCTCCGTGTCACCGAGGATGgtaaggaagt ... tttttgacagGGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGG
cttaaattccaataccatgtttttttttcgccccctttaactgtttttttgacagGGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGGAGCAAGTGGACTCTAGGACAATTGCTGCATCACCATTTCCTTACAATGT
ctttaac putative branch site (score: 34)
tttttttttcgccccc CT-rich tract
tttaactgttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaggaagttattttgtcacatacgtgcaccattacacagtcgaagttcatgtgttgacagcaaaagaggcttaacttcattctgtttagattttttagagagaaatttgttgctcatattgacaatgtcagcttaaattccaataccatgtttttttttcgccccctttaactgtttttttgacagGGAAGAAAGTTGGCAGATCAATTGAGTTGTCGAAACTGGATGAGATCATGGAGCAAGTGGACTCTAGGACAATTGCTGCATCACCATTTCCTTACAATGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC