1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacgccaccacgcaccacaccacaccaatgccgcgacgcgaacgccggcgcgctgcgctgtgggcgaccgggccgcgacgtgcttaataaacctgacctgcggttgttttcgttttcgttttgcgttcagCGGAGTTCGCGGCGTTCGCGGAGAAGGCCGGCGGCGGCGCGGCGGACGTGGGCGTGCTGGTGTGCGGGCCGCCGGGGCTGCAGGCGAGCGTGGCGAGGGA
species | Oryza sativa |
transcript | LOC_Os04g36720.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTCGCCGCGGTGAAGACGACGCGGTACGGGTGCCGGCCACAGTTCGAAG CGGAGTTCGCGGCGTTCGCGGAGAAGCCCGGCGGCGGCGCGGCGGACGTGGEST: gi|23514775|gb|BU673799.1|BU673799
genomic: CCTCGCCGCGGTGAAGACGACGCGGTACGGGTGCCGGCCACAGTTCGAAGgtacgccacc ... ttgcgttcagCGGAGTTCGCGGCGTTCGCGGAGAAGGCCGGCGGCGGCGCGGCGGACGTGG
EST: GCCGGCCACAGTTCGAAG CGGAGTTCTCTGCGTTCGCGGAGAAGGCCGGCGTCGGCTCGGCGGACGTGG
genomic: GCCGGCCACAGTTCGAAGgtacgccacc ... ttgcgttcagCGGAGTTCGCGGCGTTCGCGGAGAAGGCCGGCGGCGGCGCGGCGGACGTGG
cgacgtgcttaataaacctgacctgcggttgttttcgttttcgttttgcgttcagCGGAGTTCGCGGCGTTCGCGGAGAAGGCCGGCGGCGGCGCGGCGGACGTGGGCGTGCTGGTGTGCGGGCCGCCGGGGCTGCAGGCGAGCGTGGCGAGGGA
acctgac putative branch site (score: 12)
ttttcgttttcgtttt putative PPT
ttaataaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgccaccacgcaccacaccacaccaatgccgcgacgcgaacgccggcgcgctgcgctgtgggcgaccgggccgcgacgtgcttaataaacctgacctgcggttgttttcgttttcgttttgcgttcagCGGAGTTCGCGGCGTTCGCGGAGAAGGCCGGCGGCGGCGCGGCGGACGTGGGCGTGCTGGTGTGCGGGCCGCCGGGGCTGCAGGCGAGCGTGGCGAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG