1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...aaagttcagaaaatagcactgcatactttgtattcttatatatttgagagtgacctgattcatgcctacagctcactgttatttacctctttgatatcagGAAGAACAAGCTGAAGACACTGTGTTTCCGGCTCTGGACTTTCCCTGTTCTTGTGGACGGGCCTTTCGGGGTTGTCTCCGCGGTAGAATTCATCGGAATC
species | Oryza sativa |
transcript | LOC_Os04g36720.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: CTGGTGTACGTCTACATCTCCGCCTTCCCGAGTGACCATATCCATGTGGA CAAGAACAAGCTGAAGACACTGTGTTTCCGGCTEST: gi|117247081|gb|CT848550.1|CT848550
genomic: CTGGCGTACGTCTACATCTCCGCCTTCCCGAGTGACCATATCCATGTGGAgtaagtcttt ... ttgatatcagGAAGAACAAGCTGAAGACACTGTGTTTCCGGCT
EST: CTGGCGTACGTCTACATCTCCGCCTTCCCGAGTGACCATATCCATGTGGA GAAGAACAAGCTGAAGACACTGTGTTTCCGGCTCTGGACTTTCCCTGTTCT
genomic: CTGGCGTACGTCTACATCTCCGCCTTCCCGAGTGACCATATCCATGTGGAgtaagtcttt ... ttgatatcagGAAGAACAAGCTGAAGACACTGTGTTTCCGGCTCTGGACTTTCCCTGTTCT
gagagtgacctgattcatgcctacagctcactgttatttacctctttgatatcagGAAGAACAAGCTGAAGACACTGTGTTTCCGGCTCTGGACTTTCCCTGTTCTTGTGGACGGGCCTTTCGGGGTTGTCTCCGCGGTAGAATTCATCGGAATC
ttatttacctcttt CT-rich tract
tgttattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaagttcagaaaatagcactgcatactttgtattcttatatatttgagagtgacctgattcatgcctacagctcactgttatttacctctttgatatcagGAAGAACAAGCTGAAGACACTGTGTTTCCGGCTCTGGACTTTCCCTGTTCTTGTGGACGGGCCTTTCGGGGTTGTCTCCGCGGTAGAATTCATCGGAATC
- - - cagaaaa
- - - - - - - - - -tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - tgacctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - ttcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacagc