1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacagaattctcaagaaaatctccccaagttttccatcccctctctttccccaattttgcaatcaaaagcaagtgaaagaacctaaagctttttttttttggttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGGCGTACGTCTACATCTCCGCCTTCCCGAGTGACCATATCCATGTGGA
species | Oryza sativa |
transcript | LOC_Os04g36720.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCCTCTTTGGCATCACCG GGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGGEST: gi|88444871|gb|CI696305.1|CI696305
genomic: TTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCC-TCTTTGGCATCACCGgtacagaatt ... gttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGG
EST: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCG GGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGGEST: gi|88415262|gb|CI586468.1|CI586468
genomic: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCGgtacagaatt ... gttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGG
EST: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCG GGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGGEST: gi|88391953|gb|CI683773.1|CI683773
genomic: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCGgtacagaatt ... gttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGG
EST: GTTCGAGGGTTGGATGGCGGCCANCAAGCAGTCCCTCTTTGGCATCACCG GGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGGEST: gi|88420744|gb|CI564580.1|CI564580
genomic: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCGgtacagaatt ... gttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGG
EST: GTTCGAGGGTTGGATGGCGGCCAACAAGCAGTCCCTCTTTGGCATCACCG GGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGGEST: gi|117247081|gb|CT848550.1|CT848550
genomic: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCGgtacagaatt ... gttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGG
EST: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCG GGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGG
genomic: GTTCGAGGGTTGGATGGCGGCCACCAAGCAGTCCCTCTTTGGCATCACCGgtacagaatt ... gttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGG
ttgcaatcaaaagcaagtgaaagaacctaaagctttttttttttggttcttgcagGGAGTATTTTCCTCGCATTCAGCGCGCCGATTCTGATCGTCGCGGCTCTGGCGTACGTCTACATCTCCGCCTTCCCGAGTGACCATATCCATGTGGA
acctaaa putative branch site (score: 51)
ctttttttttttggtt CT-rich tract
taaagctttttttttt TA-rich tract