1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtatgcccttctaagtgcactgacaatcactaccttttaaggaaggattgcgatgctctatttgctgctgttgctttgcttaccggaaactatttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGG
species | Oryza sativa |
transcript | LOC_Os02g57670.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAG GGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAEST: gi|66923353|gb|CX110201.1|CX110201
genomic: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGgtatgccctt ... tttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
EST: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAG GGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAEST: gi|13420743|gb|AU174833.1|AU174833
genomic: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGgtatgccctt ... tttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
EST: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAG GGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAEST: gi|27577472|gb|CB000167.1|CB000167
genomic: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGgtatgccctt ... tttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
EST: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAG GGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAEST: gi|86900092|gb|CI300155.1|CI300155
genomic: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGgtatgccctt ... tttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
EST: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAG GGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAEST: gi|88976267|gb|CI024484.1|CI024484
genomic: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGgtatgccctt ... tttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
EST: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAG GGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAEST: gi|44678371|gb|CR291805.1|CR291805
genomic: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGgtatgccctt ... tttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
EST: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAG GGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
genomic: CGTCACAGCACAAGATCTTGTTGACATCATAAAGTCACAACTTAATAGgtatgccctt ... tttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGA
ttgcgatgctctatttgctgctgttgctttgcttaccggaaactatttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGG
tgcttac putative branch site (score: 70)
ctatttc putative PPT
aaactattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcccttctaagtgcactgacaatcactaccttttaaggaaggattgcgatgctctatttgctgctgttgctttgcttaccggaaactatttcatgtagGGATGTCGACAAGCGTCTCGTGACAGTGCCAGAAATTCGTGAAATTGGGGAATACATTGCAGAGATTAAGCTTCACCCTGAAGTCACAGCTCAAGTAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA