1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...catttctagttcagttcttctggggtgttcaacatgttcaattagttcttgtaaaaggatggctagtaagctacttaatttcctctgctgctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
species | Oryza sativa |
transcript | LOC_Os02g57670.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAA GGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGEST: gi|66923353|gb|CX110201.1|CX110201
genomic: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAAgtaatcttct ... ctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
EST: AGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAA GGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGEST: gi|13420743|gb|AU174833.1|AU174833
genomic: AGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAAgtaatcttct ... ctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
EST: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAA GGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGEST: gi|27577472|gb|CB000167.1|CB000167
genomic: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAAgtaatcttct ... ctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
EST: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAA GGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGEST: gi|86900092|gb|CI300155.1|CI300155
genomic: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAAgtaatcttct ... ctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
EST: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAA GGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGGEST: gi|44678371|gb|CR291805.1|CR291805
genomic: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAAgtaatcttct ... ctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
EST: TTCCTTCTG-CAAAGGGC-AGGC-ACGCTGCTCA-CCCAGAAGTACTCAA GGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
genomic: TTCCTTCTGCCAAAGGGCAAGGCAACGCTGCTCACCCCAGAAGTACTCAAgtaatcttct ... ctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
ttcttgtaaaaggatggctagtaagctacttaatttcctctgctgctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
acttaat putative branch site (score: 26)
tttcctctgctgct CT-rich tract
tacttaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catttctagttcagttcttctggggtgttcaacatgttcaattagttcttgtaaaaggatggctagtaagctacttaatttcctctgctgctgtctacagGGAAATGCAAGTAGAACAGGAGAGGATAGATGCTGAAAAGAAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - cttctgg
- - - - - - - - - - - - - - - - catgttc
- - - - - - - - - - - - - - - - - - - - - - gttcttg
- - - - - - - - - - - - - - - - - - - - - - - - - - aaaaggat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agctact