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ATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGgtatttattataatctgttatctgcactgtgacctccagatatttaaaattgtacaccaaaacaatttactgctcagtatcagaaaaaagaacatcaatg...
species | Oryza sativa |
transcript | LOC_Os02g56850.3 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTTTTATCGAAAAGAGCTTCCTCTAAG AGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAGEST: gi|27578226|gb|CB000921.1|CB000921
genomic: GTTTTATCGAAAAGAGCTTCCTCTAAGgtatttatta ... ctaattgcagAGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAG
EST: AAGAGCTTCCTCTAAG AGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAGEST: gi|58601900|gb|CK012428.1|CK012428
genomic: AAGAGCTTCCTCTAAGgtatttatta ... ctaattgcagAGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAG
EST: GGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAG AGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAGEST: gi|319908658|gb|HS977786.1|HS977786
genomic: GGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGgtatttatta ... ctaattgcagAGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAG
EST: GGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAG AGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAGEST: gi|4714976|gb|AU056093.1|AU056093
genomic: GGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGgtatttatta ... ctaattgcagAGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAG
EST: GGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAG AGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAG
genomic: GGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGgtatttatta ... ctaattgcagAGGTTTCGATGATGAGATGAGGACGGTTGTTGCAAGTAACCTTGAGGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATATATTGCTGTTGAATTTGCTTCTATATGGAAAGGGATGGGTGCGCACGTAGACTTGTTTTATCGAAAAGAGCTTCCTCTAAGgtatttattataatctgttatctgcactgtgacctccagatatttaaaattgtacaccaaaacaatttactgctcagtatcagaaaaaagaacatcaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT