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TTGAGTAAAACAGCCGATGGCATAAAAGTTGTCACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAGgtatttaggatagttcaatgctgaaagttatgttctctgtcactttaataatttctttgaatacatctctcttgatgactgttctgtgctggatgaaaaa...
species | Oryza sativa |
transcript | LOC_Os02g56850.3 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: CACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAG GTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAGEST: gi|218503186|gb|FG945930.1|FG945930
genomic: CACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAGgtatttagga ... ttgcgtgcagGTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAG
EST: TGCAGATGTTGTTCTGTTTGCTACAG GTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAGEST: gi|27578226|gb|CB000921.1|CB000921
genomic: TGCAGATGTTGTTCTGTTTGCTACAGgtatttagga ... ttgcgtgcagGTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAG
EST: CACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAG GTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAGEST: gi|58601900|gb|CK012428.1|CK012428
genomic: CACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAGgtatttagga ... ttgcgtgcagGTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAG
EST: CACTGACAAAGGAGAGGAGATCATTGCAGATGTCGTGCTGTTTGCTACAG GTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAGEST: gi|319908658|gb|HS977786.1|HS977786
genomic: CACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAGgtatttagga ... ttgcgtgcagGTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAG
EST: CACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAG GTCGCACACCAAACTCCCAGAGGTTEST: gi|4714976|gb|AU056093.1|AU056093
genomic: CACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAGgtatttagga ... ttgcgtgcagGTCGCACACCAAACTCCCAGAGGTT
EST: ACTGACAAAGGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAG GTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAG
genomic: ACTGACAAAGG-AGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAGgtatttagga ... ttgcgtgcagGTCGCACACCAAACTCCCAGAGGTTGAACTTGGAAGCTGCTGGTGTTGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTGAGTAAAACAGCCGATGGCATAAAAGTTGTCACTGACAAAGGAGAGGAGATCATTGCAGATGTTGTTCTGTTTGCTACAGgtatttaggatagttcaatgctgaaagttatgttctctgtcactttaataatttctttgaatacatctctcttgatgactgttctgtgctggatgaaaaa
- - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG