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...atgtgctggttacatcactgattttcttttccctttagtttttttttaaatgtcctttggtgtattattttggctgacactgataagaacccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAACGTGCTGTAATCCTTGGTGGCGG
species | Oryza sativa |
transcript | LOC_Os02g56850.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGC-TTAAGTTTGGAGGAGCTACCAAAAEST: gi|58586132|gb|CF984440.1|CF984440
genomic: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
EST: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAAEST: gi|58601900|gb|CK012428.1|CK012428
genomic: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
EST: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAAEST: gi|117220740|gb|CT845514.1|CT845514
genomic: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
EST: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAAEST: gi|319908658|gb|HS977786.1|HS977786
genomic: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
EST: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAAEST: gi|29675048|gb|CB671323.1|CB671323
genomic: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
EST: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAAEST: gi|4714976|gb|AU056093.1|AU056093
genomic: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
EST: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAAEST: gi|88407233|gb|CI583691.1|CI583691
genomic: TATTGATAGCAACTGGTAGCCGAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
EST: ATTGATAGCAACTGGTAGCCCGAGCTCAACGTGTCAACATTCCTGGGAAG GAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
genomic: ATTGATAGCAACTGGTAGCC-GAGCTCAACGTGTCAACATTCCTGGGAAGgtaacaaaat ... ccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAA
ttaaatgtcctttggtgtattattttggctgacactgataagaacccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAACGTGCTGTAATCCTTGGTGGCGG
cactgat putative branch site (score: 3)
cccgctt putative PPT
tgtattatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtgctggttacatcactgattttcttttccctttagtttttttttaaatgtcctttggtgtattattttggctgacactgataagaacccgcttgcagGAGTTAGCTATTACTTCAGATGAGGCCTTAAGTTTGGAGGAGCTACCAAAACGTGCTGTAATCCTTGGTGGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG