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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTATGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggacacaacaataaaccagttgttaatatcatttggcactcgagtttctaatattatccattggctttgcag

Basic information

species Oryza sativa
transcript LOC_Os02g56850.2
intron # 15
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88291967|gb|CI532559.1|CI532559
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86251596|gb|CI016885.1|CI016885
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88848384|gb|CI086906.1|CI086906
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88254847|gb|CI351475.1|CI351475
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86431565|gb|CI085176.1|CI085176
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|9886227|gb|AU102120.1|AU102120
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88217368|gb|CI217217.1|CI217217
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88323267|gb|CI553512.1|CI553512
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88459892|gb|CI524351.1|CI524351
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86522150|gb|CI162356.1|CI162356
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89184506|gb|CI047071.1|CI047071
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|29670416|gb|CB666691.1|CB666691
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88295376|gb|CI527739.1|CI527739
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|29675049|gb|CB671324.1|CB671324
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86434618|gb|CI105851.1|CI105851
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|18385573|gb|BM418772.1|BM418772
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACA-TGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|87015137|gb|CI273535.1|CI273535
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88455858|gb|CI526674.1|CI526674
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88460573|gb|CI532046.1|CI532046
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88320835|gb|CI527987.1|CI527987
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86594898|gb|CI258152.1|CI258152
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86489073|gb|CI131706.1|CI131706
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88319637|gb|CI520680.1|CI520680
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88256324|gb|CI358712.1|CI358712
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|33675534|gb|CF303773.1|CF303773
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88841227|gb|CI080681.1|CI080681
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|58686026|gb|CK074713.1|CK074713
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89198081|gb|CI117559.1|CI117559
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89185441|gb|CI051769.1|CI051769
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|33682254|gb|CF310493.1|CF310493
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|29625188|gb|CB630199.1|CB630199
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86603737|gb|CI112497.1|CI112497
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88274060|gb|CI394466.1|CI394466
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88964176|gb|CI045369.1|CI045369
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86603354|gb|CI112114.1|CI112114
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88957187|gb|CI095173.1|CI095173
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88833560|gb|CI077041.1|CI077041
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86426951|gb|CI072048.1|CI072048
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89187152|gb|CI047219.1|CI047219
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88408891|gb|CI554213.1|CI554213
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88966781|gb|CI366004.1|CI366004
EST:     GGCTGTAGCCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: GGCTGTAG-CGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86594937|gb|CI258191.1|CI258191
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|87014199|gb|CI273389.1|CI273389
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGGCCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|396941644|gb|HO188301.1|HO188301
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88845181|gb|CI084106.1|CI084106
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89190847|gb|CI392700.1|CI392700
EST:     TGGCTGTAGCGCTGAAGTGTTGAGCCACCAAGGCGACCTTTGACACCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|218481326|gb|FG969724.1|FG969724
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86430740|gb|CI083163.1|CI083163
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86599008|gb|CI355625.1|CI355625
EST:     TAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88257343|gb|CI359731.1|CI359731
EST:     TGGCTGTAGCGCTGAAGTGTGGGGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86872978|gb|CI326975.1|CI326975
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86426091|gb|CI071188.1|CI071188
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88955687|gb|CI091976.1|CI091976
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88849681|gb|CI089787.1|CI089787
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88275065|gb|CI395669.1|CI395669
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACACCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTT
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88838759|gb|CI376297.1|CI376297
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88848329|gb|CI086851.1|CI086851
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88460680|gb|CI534552.1|CI534552
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88906458|gb|CI375530.1|CI375530
EST:     TGGCTTTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86896270|gb|CI330158.1|CI330158
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88955638|gb|CI091927.1|CI091927
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86526760|gb|CI166966.1|CI166966
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCA-CCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88253128|gb|CI351754.1|CI351754
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAAATGCGGACACT
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAA-TGCGGAC-CT
EST: gi|86845452|gb|CI340491.1|CI340491
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88257486|gb|CI359874.1|CI359874
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|89188782|gb|CI048518.1|CI048518
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86602727|gb|CI357091.1|CI357091
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|88248383|gb|CI248232.1|CI248232
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
EST: gi|86429566|gb|CI076247.1|CI076247
EST:     TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACT                         GTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG
genomic: TGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggac ... ggctttgcagGTTGGTATTCACCCGTCTGCTGCTGAAGAGTTTGTGACAATGCGGACCTTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GGTATGGCTGTAGCGCTGAAGTGTGGAGCCACCAAGGCGACCTTTGACAGCACTgtacgtggacacaacaataaaccagttgttaatatcatttggcactcgagtttctaatattatccattggctttgcag

- - - - - - -  CTGAAG
- - - - - - - - - - - GTGGAG