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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGTCACCGACGGCGGGAGCTACGACTACGACCTGTTCGTGATCGGCGCCGGGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttttctcctctcccccgctccccatttttgcgaggaaacgtgttggatttttattttttttcgtgtgatttgattcggtgtgtggcgcggttcag

Basic information

species Oryza sativa
transcript LOC_Os02g56850.2
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g56850.1 (Oryza sativa), 5'ss of exon 2
lower sequence: GRMZM5G806449_T02 (Zea mays), 5'ss of exon 2
CGTCACCGACGGCGGGAGCTACGACTACGACCTGTTCGTGATCGGCGCCGGGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttttctcctctcccc--cgctccccatttttgcgaggaaacgtgttggatttt-tattttttttcgtgtgat-ttgattcggtgtgtggcgcggttcag
|||| | || || |||  ||| |||||||| || ||||| ||||| || || ||||||||||| || |||||||||||| |||| |||||||| ||||||||| |    ||| || | ||||  |    || ||   ||    ||  | |  | |   |  ||        | | |  | | |  ||| ||       ||      
CGTCGCGGATGGTGGGCACTATGACTACGATCTCTTCGTCATCGGGGCGGGCAGCGGCGGCGTTCGCGGCTCTCGCACCGCCGCCTCCTTCGGAGCTAAGgttcgttgcttccccacaccccaccagctcctatgcctgacgtgatgcctcctagccgtgatacccgagcccatctactgtcgcctcgctgctctatccg------
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88416046|gb|CI594158.1|CI594158
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|25802825|gb|CA758786.1|CA758786
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|88392434|gb|CI612908.1|CI612908
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|426418|gb|D22281.1|D22281
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|117220740|gb|CT845514.1|CT845514
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|88723894|gb|CI745591.1|CI745591
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|29675048|gb|CB671323.1|CB671323
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|88694888|gb|CI738926.1|CI738926
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|88417209|gb|CI576283.1|CI576283
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|88726529|gb|CI750184.1|CI750184
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
EST: gi|2443112|gb|C74883.1|C74883
EST:     GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAG                         GTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA
genomic: GGAGCGGCGGCGTCCGGGGCTCTCGCACCTCCGCGTCCTTCGGGGCTAAGgtttgacttt ... cgcggttcagGTTGCGATTTGCGAGCTCCCGTTCCATCCCATCAGCTCGGATTGGCAAGGA