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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATTGAGTTCCTTATATCAAGTTGGTTCTGCATCCGGATCGACCGGACTTGCATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAGgtaacaaaaatatgttgatgcggccagtaattatattaggaaataggatatatggaacttactttgactttctttttcag

Basic information

species Oryza sativa
transcript LOC_Os02g53210.7
intron # 5
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29674942|gb|CB671217.1|CB671217
EST:     CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAG                         ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
genomic: CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAGgtaacaaaaa ... tctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
EST: gi|38482043|gb|CF966104.1|CF966104
EST:     TGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAG                         ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
genomic: TGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAGgtaacaaaaa ... tctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
EST: gi|33692950|gb|CF321189.1|CF321189
EST:     CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAG                         ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
genomic: CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAGgtaacaaaaa ... tctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
EST: gi|58600474|gb|CK011002.1|CK011002
EST:     CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAG                         ATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA
genomic: CATCTGAAACTACCATCTGGGGGTCACTATGGAAAGATCTTCTGTACCAGgtaacaaaaa ... tctttttcagATTTTCCGTGCGATTCGAAGCATTCTGTATGGTTTTGTTGCCTTCTTTTCA