1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgctttactgttttacgagccacttgtaagcacacaaacgagtacttatgaatatttgttcattgcttacactttcatgtattgcccttgttacatcgattctggctcgtcttacttgttgacttcttgtcattttttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAAACTGGGAAGAAACTTGTATTCTCTAAAGATCCTAGACATGGTTCTCATT
species | Oryza sativa |
transcript | LOC_Os02g53210.7 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAG TCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAAEST: gi|29674941|gb|CB671216.1|CB671216
genomic: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgcttta ... tttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
EST: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAG TCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
genomic: AAGACCAGGACACAAAACCTGCTCACCTGTGGCAATTGATGGTCACAAAGgtatgcttta ... tttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAA
ttacatcgattctggctcgtcttacttgttgacttcttgtcattttttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAAACTGGGAAGAAACTTGTATTCTCTAAAGATCCTAGACATGGTTCTCATT
tgttgac putative branch site (score: 3)
cttcttgtcatttttt CT-rich tract
tcatttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctttactgttttacgagccacttgtaagcacacaaacgagtacttatgaatatttgttcattgcttacactttcatgtattgcccttgttacatcgattctggctcgtcttacttgttgacttcttgtcattttttgctccagTCAAGACTTTCACCTTTTGCAAACACTAGAACTAGGAGAAAGGGAGATGAAACTGGGAAGAAACTTGTATTCTCTAAAGATCCTAGACATGGTTCTCATT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA