1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCTGCTGAACAAGGAACTGCACCGAACCTTATATGGCTTTATAATTTTTGAGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAGgtattgttttagactgaacatgatattcatagctattaatggatggtacatgcttattttgtttttatgttgttgtag
species | Oryza sativa |
transcript | LOC_Os02g53210.7 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGGCATGAACTATTTCAATGAACTTCAG ACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTTEST: gi|33678235|gb|CF306474.1|CF306474
genomic: GCGGCATGAACTATTTCAATGAACTTCAGgtattgtttt ... gttgttgtagACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTT
EST: AGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAG ACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTTEST: gi|29621685|gb|CB626696.1|CB626696
genomic: AGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAGgtattgtttt ... gttgttgtagACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTT
EST: AGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAG ACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTTEST: gi|29674941|gb|CB671216.1|CB671216
genomic: AGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAGgtattgtttt ... gttgttgtagACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTT
EST: AGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAG ACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTT
genomic: AGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAGgtattgtttt ... gttgttgtagACTGATACTTCTATGGCAGTGGAAGCTAAAACAATGAAGAGATGGGAATTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTGCTGAACAAGGAACTGCACCGAACCTTATATGGCTTTATAATTTTTGAGGTAGACTGGGCTGATGTGCGCGGCATGAACTATTTCAATGAACTTCAGgtattgttttagactgaacatgatattcatagctattaatggatggtacatgcttattttgtttttatgttgttgtag
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