1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
AGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataattttgttcttatactcggtaacgccagaccattgaatcaaaacattgttcaaggttgatactactctcctgtttctgttatttgtgcag
species | Oryza sativa |
transcript | LOC_Os02g42730.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|86255003|gb|CI017123.1|CI017123
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|88384603|gb|CI554095.1|CI554095
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|86855117|gb|CI263184.1|CI263184
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|86840647|gb|CI333911.1|CI333911
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|218501432|gb|FG956138.1|FG956138
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTATCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataattttgttcttatactcggtaacgccagaccattgaatcaaaacattgttcaaggttgatactactctcctgtttctgttatttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT