1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acatatatattctaagtcagaaggtttggtgtagtgagaaaaacagtcaaatggttcaggtgtgtgttcattgcataacattaaatgattctatgttcagGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAG
species | Oryza sativa |
transcript | LOC_Os02g42730.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCTAATGCGAAG GTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTEST: gi|86255003|gb|CI017123.1|CI017123
genomic: TCCTAATGCGAAGgtagtgtttc ... ctatgttcagGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCT
EST: GCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAG GTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTEST: gi|86855117|gb|CI263184.1|CI263184
genomic: GCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGgtagtgtttc ... ctatgttcagGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCT
EST: GCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAG GTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTEST: gi|218501432|gb|FG956138.1|FG956138
genomic: GCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGgtagtgtttc ... ctatgttcagGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCT
EST: GCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAG GTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCT
genomic: GCCCTTCTGATGTTACACCAATCGATAGACTTGACTCTCCTAATGCGAAGgtagtgtttc ... ctatgttcagGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCT
gtcaaatggttcaggtgtgtgttcattgcataacattaaatgattctatgttcagGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAG
gcataac putative branch site (score: 11)
ataacattaaatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatatatattctaagtcagaaggtttggtgtagtgagaaaaacagtcaaatggttcaggtgtgtgttcattgcataacattaaatgattctatgttcagGTGACAGCCTCCTCCAGGCATAATTTCCAGGAATCCAAGGGCAGAATTCCTAAAAGTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - - - - - tttggtg
- - - - - - - - - - - - - - - - - - agaaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cattgca