1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagataattttgttcttatactcggtaacgccagaccattgaatcaaaacattgttcaaggttgatactactctcctgtttctgttatttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTGAAATGTATGTTTTCTTTCATCTTCCATCATACAAATGTGTATTGTATG
species | Oryza sativa |
transcript | LOC_Os02g42730.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|86255003|gb|CI017123.1|CI017123
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|88384603|gb|CI554095.1|CI554095
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|86855117|gb|CI263184.1|CI263184
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|86840647|gb|CI333911.1|CI333911
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTEST: gi|218501432|gb|FG956138.1|FG956138
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
EST: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTATCAATCAGTTAAG AATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
genomic: GTGACAGTATCTTGCTCCATAAGCTTGAAGAAGTTTGTCAATCAGTTAAGgtagataatt ... atttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCT
aatcaaaacattgttcaaggttgatactactctcctgtttctgttatttgtgcagAATCTTGAATCTCTCCTCTTGGGATCACATTCAAGGGCATGATGAGCAGCTGAAATGTATGTTTTCTTTCATCTTCCATCATACAAATGTGTATTGTATG
ggttgat putative branch site (score: 8)
tgttattt TA-rich tract