1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
TGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagacaatgtgttgtagaagcaaacatcctaataaaactgaattctattttcagttaaaaatattaaattaagaagctgaacttcatcatatgta...
species | Oryza sativa |
transcript | LOC_Os02g42520.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|89195803|gb|CI007222.1|CI007222
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|86500952|gb|CI143585.1|CI143585
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|29643822|gb|CB648829.1|CB648829
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|88227619|gb|CI227099.1|CI227099
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|86505804|gb|CI148437.1|CI148437
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|29618347|gb|CB623359.1|CB623359
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATGACATCEST: gi|86257487|gb|CI004304.1|CI004304
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|88964247|gb|CI045440.1|CI045440
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|117244917|gb|CT849641.1|CT849641
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATGACATCEST: gi|32948088|gb|BP184660.1|BP184660
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|88965373|gb|CI011624.1|CI011624
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATCEST: gi|58684609|gb|CK073296.1|CK073296
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
EST: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCEST: gi|88906992|gb|CI376064.1|CI376064
genomic: GGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTC
EST: CAAGTATGCAAACAAG GAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
genomic: CAAGTATGCAAACAAGgtacggagac ... ttcttctcagGAAATCCAAGTCGATGACCTTGTTACACATGATTTGTCATTCGATTACATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTTTGTTTGGAGGATGGAGACCTAAATCTGATCTACCTTTGTTAGTGGACAAGTATGCAAACAAGgtacggagacaatgtgttgtagaagcaaacatcctaataaaactgaattctattttcagttaaaaatattaaattaagaagctgaacttcatcatatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aataaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aaaaata