1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtaatttttattcctttccattgcactacaattccacctattctgcccagatatattatcttctcatgttttggtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTT
species | Oryza sativa |
transcript | LOC_Os02g42520.2 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT GGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTEST: gi|29643822|gb|CB648829.1|CB648829
genomic: GGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaattttta ... gtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
EST: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT GGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTEST: gi|29618347|gb|CB623359.1|CB623359
genomic: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaattttta ... gtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
EST: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT GGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTEST: gi|117244917|gb|CT849641.1|CT849641
genomic: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaattttta ... gtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
EST: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT GGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTEST: gi|32948088|gb|BP184660.1|BP184660
genomic: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaattttta ... gtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
EST: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT GGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTEST: gi|88965373|gb|CI011624.1|CI011624
genomic: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaattttta ... gtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
EST: TACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT GGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTEST: gi|58684609|gb|CK073296.1|CK073296
genomic: TACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaattttta ... gtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
EST: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT GGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
genomic: GCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGATgtaattttta ... gtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTT
caattccacctattctgcccagatatattatcttctcatgttttggtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTT
tcttctt CT-rich tract
agatatattatctt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttattcctttccattgcactacaattccacctattctgcccagatatattatcttctcatgttttggtcttcttagGGTTGGGGGCTGACTGTAACTCTTGGTGTGCCAAAAGCAAAGCCAGAGGTTTCTGCTCATTATGCACTACTTCTGTCTGGAAGAACATTGAAGGGGTCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG