1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tcaacagctcctgttgcactggtgtccaattggtagtttctaaaatcttgatcatatccctgatatacacagcataaagacattgttttcatactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT
species | Oryza sativa |
transcript | LOC_Os02g42520.2 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAG GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGEST: gi|29618347|gb|CB623359.1|CB623359
genomic: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacatcatc ... atactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
EST: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAG GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGEST: gi|117244917|gb|CT849641.1|CT849641
genomic: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacatcatc ... atactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
EST: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAG GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGEST: gi|32948088|gb|BP184660.1|BP184660
genomic: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacatcatc ... atactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
EST: TGAATGAACCTGTTCAGCAG GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGEST: gi|58684609|gb|CK073296.1|CK073296
genomic: TGAATGAACCTGTTCAGCAGgtacatcatc ... atactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
EST: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAG GTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
genomic: GTGTCACAGATTTTATTAATCCAGAAGAATTGAATGAACCTGTTCAGCAGgtacatcatc ... atactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTG
tcttgatcatatccctgatatacacagcataaagacattgttttcatactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT
ccctgat putative branch site (score: 7)
ttttcat putative PPT
attgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaacagctcctgttgcactggtgtccaattggtagtttctaaaatcttgatcatatccctgatatacacagcataaagacattgttttcatactttcagGTGGTGAAGCGGCTGACCAATGGAGGTGCAGATTACTCTTTTGAGTGCGTGGGTGATACAGGAGTAGTGTCGACTGCACTGCAATCATGTTCTGAT
- - - gctcctg
- - - - - - - - - ctggtgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - -atccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agcataa