1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gcctttttgcctcatatgttcaattgatgatgataagatgctgaattttttgcatcagtctacttgttaaatgcccttgcatttcttgatatgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTACTAGTCTCTACTGAAGGCGGCGACCAAGCTT
species | Oryza sativa |
transcript | LOC_Os02g40510.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAG TCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTAEST: gi|58593163|gb|CF991471.1|CF991471
genomic: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAGgtaaccaatc ... atgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTA
EST: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAG TCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTAEST: gi|29668556|gb|CB664831.1|CB664831
genomic: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAGgtaaccaatc ... atgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTA
EST: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAG TCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTAEST: gi|29668596|gb|CB664871.1|CB664871
genomic: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAGgtaaccaatc ... atgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTA
EST: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAG TCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTAEST: gi|29640330|gb|CB645339.1|CB645339
genomic: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAGgtaaccaatc ... atgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTA
EST: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAG TCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTAEST: gi|29686796|gb|CB683071.1|CB683071
genomic: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAGgtaaccaatc ... atgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTA
EST: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAG TCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTA
genomic: AAGAAAACATTAATCAAGAAACAAGCACCTCGAATCAACATGAATATGAGgtaaccaatc ... atgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTA
ttttttgcatcagtctacttgttaaatgcccttgcatttcttgatatgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTACTAGTCTCTACTGAAGGCGGCGACCAAGCTT
tcttgat putative branch site (score: 11)
ttgttaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcctttttgcctcatatgttcaattgatgatgataagatgctgaattttttgcatcagtctacttgttaaatgcccttgcatttcttgatatgtttgcagTCTAATCCTTCTGATGCTGAGCCTAAACAAAAAGGCACACCAGAGGGTTTACTAGTCTCTACTGAAGGCGGCGACCAAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- -tttttgc
- - - - - - catatgt
- - - - - - - - - - - - - atgatga
- - - - - - - - - - - - - - - - - - - tgctgaa
- - - - - - - - - - - - - - - - - - - - - - - -ttttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctacttg