1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GACATCATCTTGGCCGAGGTCGATCTGCCCGTCTCCAAGTGCTTCAAGATGCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAAgtaagctgtcctcctattcctctgatgcccatgctcgtagggttgttgtagtgaccatcctcatctttgatgcgaattatgcag
species | Oryza sativa |
transcript | LOC_Os02g40510.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: GCGCCACATCCCCATCATAA TGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCGEST: gi|29668556|gb|CB664831.1|CB664831
genomic: GCGCCACATCCCCATCATAAgtaagctgtc ... aattatgcagTGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCG
EST: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAA TGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCGEST: gi|13895986|gb|AU182322.1|AU182322
genomic: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAAgtaagctgtc ... aattatgcagTGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCG
EST: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAA TGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCGEST: gi|29668596|gb|CB664871.1|CB664871
genomic: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAAgtaagctgtc ... aattatgcagTGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCG
EST: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAA TGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCGEST: gi|29640330|gb|CB645339.1|CB645339
genomic: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAAgtaagctgtc ... aattatgcagTGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCG
EST: AATTGCGCCACATCCTCATAATAA TGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCGEST: gi|29686796|gb|CB683071.1|CB683071
genomic: AATTGCGCCACATCCCCATCATAAgtaagctgtc ... aattatgcagTGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCG
EST: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAA TGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCG
genomic: GCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAAgtaagctgtc ... aattatgcagTGATGTCCAACAGAGACGAGGTCTCTGTTGTTGTCAAGTGCTTGCGTCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GACATCATCTTGGCCGAGGTCGATCTGCCCGTCTCCAAGTGCTTCAAGATGCTCAAATACATCGCCAGGAACAAGGAATTGCGCCACATCCCCATCATAAgtaagctgtcctcctattcctctgatgcccatgctcgtagggttgttgtagtgaccatcctcatctttgatgcgaattatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA