1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtcagttcagctttgtctgcttagtatttggtttgctcttataattaaggattaagattgctttagtagatgaattagcagttctatcacaccttctcgcatggaatgatacgtctttgtttttgtttcagTGACTTGCGCCAAGTCTCCGAGGCAGGTGATCAACGTACTCAACTGCGAGGCGGGGGAGATCGACATCATCTTGGCCGAGGTCGATCTGCCCGTCTCCAA
species | Oryza sativa |
transcript | LOC_Os02g40510.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: AAGTAGCTCACGGGAGGTGCTCCGCCTCCTCTGCAACTGCTCATACCAAG TGACTTGCGCCAAGTCTCCGAGGCAGGTGATCAACGTACTCAACTGCGAGGEST: gi|33675827|gb|CF304066.1|CF304066
genomic: AAGTAGCTCACGGGAGGTGCTCCGCCTCCTCTGCAACTGCTCATACCAAGgtcagttcag ... tttgtttcagTGACTTGCGCCAAGTCTCCGAGGCAGGTGATCAACGTACTCAACTGCGAGG
EST: AAGTAGCTCACGGGAGGTGCTCCGCCTCCTCTGCAACTGCTCATACCAAG TGACTTGCGCCAAGTCTC
genomic: AAGTAGCTCACGGGAGGTGCTCCGCCTCCTCTGCAACTGCTCATACCAAGgtcagttcag ... tttgtttcagTGACTTGCGCCAAGTCTC
agcagttctatcacaccttctcgcatggaatgatacgtctttgtttttgtttcagTGACTTGCGCCAAGTCTCCGAGGCAGGTGATCAACGTACTCAACTGCGAGGCGGGGGAGATCGACATCATCTTGGCCGAGGTCGATCTGCCCGTCTCCAA
tctttgtttttgtttc CT-rich tract
tttgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttcagctttgtctgcttagtatttggtttgctcttataattaaggattaagattgctttagtagatgaattagcagttctatcacaccttctcgcatggaatgatacgtctttgtttttgtttcagTGACTTGCGCCAAGTCTCCGAGGCAGGTGATCAACGTACTCAACTGCGAGGCGGGGGAGATCGACATCATCTTGGCCGAGGTCGATCTGCCCGTCTCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC