1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagaatatatttgaataccacaaacattacaaaattctactaatatttaacttgatatcaatcttgttctggttttggatttgaatttgtggttaacttttgtttttgtttttgtttttgggtgacagGTGCACTCGGAGATGAGCAAGAGCGCGAGGAAGCGGCTGTGCAGGGTGATCAACTGCAGGAAGCTGTCGGACAAGGCGTGCGCGCACGCGGCGCAGAACG
species | Oryza sativa |
transcript | LOC_Os02g38120.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CCCGCCCCGAGCACGACGGCCTCTACAAAGTCGTCGACACTTACCTCAAG GTGCACTCGGAGATGAGCAAGAGCGCGAGGAAGCGGCTGTGCAGGGTGATC
genomic: CCCGCCCCGAGCACGACGGCCTCTACAAAGTCGTCGACACTTACCTCAAGgtgagaatat ... tgggtgacagGTGCACTCGGAGATGAGCAAGAGCGCGAGGAAGCGGCTGTGCAGGGTGATC
tttggatttgaatttgtggttaacttttgtttttgtttttgtttttgggtgacagGTGCACTCGGAGATGAGCAAGAGCGCGAGGAAGCGGCTGTGCAGGGTGATCAACTGCAGGAAGCTGTCGGACAAGGCGTGCGCGCACGCGGCGCAGAACG
ggttaac putative branch site (score: 7)
cttttgtttttgtttt CT-rich tract
ttaacttttgtttttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaatatatttgaataccacaaacattacaaaattctactaatatttaacttgatatcaatcttgttctggttttggatttgaatttgtggttaacttttgtttttgtttttgtttttgggtgacagGTGCACTCGGAGATGAGCAAGAGCGCGAGGAAGCGGCTGTGCAGGGTGATCAACTGCAGGAAGCTGTCGGACAAGGCGTGCGCGCACGCGGCGCAGAACG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG