1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgtttttttcttgagaaatcctgatttgtggaatcaatcaatcaatcaatcttggcatggtttcagactttcagttcctgggattcttgcctgtcgtctgaggtgattgaatcgtggttgcctgatttttgtgggtgtttgttgtgatgttcacagGTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTGCTTGTATCAGCTTCACAAG
species | Oryza sativa |
transcript | LOC_Os02g38120.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: ATGAAACTTGGCACCCGGCCTGACACCTTCTTCTCCAACGAATCCGTGAG GTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTGEST: gi|88448666|gb|CI694058.1|CI694058
genomic: ATGAAACTTGGCACCCGGCCTGACACCTTCTTCTCCAACGAATCCGTGAGgtgttttttt ... atgttcacagGTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTG
EST: ATGAAACTTGGCACCCGGCCTGACACCTTCTTCTCCAACGAATCCGTGAG GTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTGEST: gi|88740691|gb|CI764199.1|CI764199
genomic: ATGAAACTTGGCACCCGGCCTGACACCTTCTTCTCCAACGAATCCGTGAGgtgttttttt ... atgttcacagGTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTG
EST: ATGAAACTTGGCACCCGGCCTGACACCTTCTTCTCCAACGAATCCGTGAG GTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTGEST: gi|58681201|gb|CK069888.1|CK069888
genomic: ATGAAACTTGGCACCCGGCCTGACACCTTCTTCTCCAACGAATCCGTGAGgtgttttttt ... atgttcacagGTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTG
EST: ATGAAACTTGGCACCCGGCCTGACACCTTCTACTCCAACGAATCCGTGAG GTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTG
genomic: ATGAAACTTGGCACCCGGCCTGACACCTTCTTCTCCAACGAATCCGTGAGgtgttttttt ... atgttcacagGTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTG
ggtgattgaatcgtggttgcctgatttttgtgggtgtttgttgtgatgttcacagGTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTGCTTGTATCAGCTTCACAAG
gcctgat putative branch site (score: 4)
tgattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtttttttcttgagaaatcctgatttgtggaatcaatcaatcaatcaatcttggcatggtttcagactttcagttcctgggattcttgcctgtcgtctgaggtgattgaatcgtggttgcctgatttttgtgggtgtttgttgtgatgttcacagGTCTGTCTGCACAGAGGTCGCCACTGACCTGCAAATCTTGGTGGGTGACTGCTTGTATCAGCTTCACAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT