Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|58662491|gb|CK051177.1|CK051177EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST:
gi|58609058|gb|CK037091.1|CK037091EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTC
EST:
gi|29632226|gb|CB637235.1|CB637235EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST:
gi|58665870|gb|CK054556.1|CK054556EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST:
gi|58656839|gb|CK045519.1|CK045519EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTACGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST:
gi|29677237|gb|CB673512.1|CB673512EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
EST:
gi|58696107|gb|CK084794.1|CK084794EST: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAG GTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
genomic: CCATCGCCGCCTTCGACCACGCCTCCGAGGAGGTCCTCAACTACGACCAGgttggttagc ... ttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.accgcatggcttgtctcatctggggagcttttgctttgctttgctttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGCGAGCCGGAGATCGTGAGGCACTTCCTGCTCAAGACGCTCCTGCTGCAGG
ctttgctttgcttt CT-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gttggttagctattcgcggcggcggcgctttcggattgtgcggattcagctcatctggaaaccgcatggcttgtctcatctggggagcttttgctttgctttgctttgctcgcagGTGTTCGTGAGGGATTTCGTGCCGAGCGCGCTGGCGTTCCTGATGAACGGCGAGCCGGAGATCGTGAGGCACTTCCTGCTCAAGACGCTCCTGCTGCAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG