1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctgtcacattttcgcaattacccaaacacagtagacaacttaaaatgctaaatccaaagctctgaagttgattaattactgtcctttttttattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGACACCGACATCTCGTCCGGGAAGATCTCCTTGAGAAGCTTGGTATAGTAC
species | Oryza sativa |
transcript | LOC_Os02g33110.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCGGGCACGGCGTCAAACCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCEST: gi|29660393|gb|CB656668.1|CB656668
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCC
EST: GCCGGGCACGGCGCCCAGCCCGTCGTCCTCATGTGCACCGACCCTACCAA GTCTTCTCTTAGCCCCGGATCTCTACAAEST: gi|29660421|gb|CB656696.1|CB656696
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCC-GGATCTCTACAA
EST: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTAC-AA GTCTTCTCTTACCCCG-ATCTCTA-AAGCCAACTTTTGCCGGG
genomic: GCCGGGCACGGCGCCAAGCCCGTCGTCCTCATGTGCACCGACCCTACCAAgtacgatacc ... tattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGG
tgctaaatccaaagctctgaagttgattaattactgtcctttttttattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGACACCGACATCTCGTCCGGGAAGATCTCCTTGAGAAGCTTGGTATAGTAC
ttactgtccttttttt CT-rich tract
aagttgattaatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctgtcacattttcgcaattacccaaacacagtagacaacttaaaatgctaaatccaaagctctgaagttgattaattactgtcctttttttattgagcagGTCTTCTCTTAGCCCGGATCTCTACAAGCCAACTTTTGCCGGGTTCGTCGACACCGACATCTCGTCCGGGAAGATCTCCTTGAGAAGCTTGGTATAGTAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC