1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaatcatagttacaattttgcaatcctaatttcttgtactacctacctccacaaatgtttgatgttattagttatcttaatttcaagagctaaccaaacgtaaaagaaaaattggagggactagaggtttaattagaattgatttggagattgatggcttggcttgtgtcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGTGGCCAATCGAGGAGCTGGAGACGCTGAGGGGCAAATCGGTCAGCGTCT
species | Oryza sativa |
transcript | LOC_Os02g33110.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCAT GCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGEST: gi|29660429|gb|CB656704.1|CB656704
genomic: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
EST: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCAT GCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGEST: gi|29642631|gb|CB647638.1|CB647638
genomic: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
EST: GTCCGACAGCGTCACCTACGACAAGGCTGA-GGGCTGGGCCGGCATCCAT GCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGEST: gi|29660393|gb|CB656668.1|CB656668
genomic: GTCCGACAGCGTCACCTACGACAAGGC-GAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
EST: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCAT GCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGEST: gi|29660423|gb|CB656698.1|CB656698
genomic: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
EST: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCAT GCCATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGEST: gi|29660455|gb|CB656730.1|CB656730
genomic: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
EST: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCAT GCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGEST: gi|29660421|gb|CB656696.1|CB656696
genomic: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
EST: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCAT GCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGEST: gi|29660483|gb|CB656758.1|CB656758
genomic: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
EST: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCAT GCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
genomic: AGTCCGACAGCGTCACCTACGACAAGGCGAAGGGCTGGGCCGGCATCCATgtaaatcata ... tcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAG
gaggtttaattagaattgatttggagattgatggcttggcttgtgtcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGTGGCCAATCGAGGAGCTGGAGACGCTGAGGGGCAAATCGGTCAGCGTCT
gattgat putative branch site (score: 4)
ttaattagaattgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatcatagttacaattttgcaatcctaatttcttgtactacctacctccacaaatgtttgatgttattagttatcttaatttcaagagctaaccaaacgtaaaagaaaaattggagggactagaggtttaattagaattgatttggagattgatggcttggcttgtgtcgttggcagGCGATCCCAAGAAAGGTATGGCTGGACCCGAGCGGGAAGCAGCTTCTGCAGTGGCCAATCGAGGAGCTGGAGACGCTGAGGGGCAAATCGGTCAGCGTCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA