1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...acccccacccccaccccaaaaaaaaattgggggatccgccccagttatacatgaaaaatgttttgagcttttgagttgataagttgagaacattgaacagGGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAGGGAGCTGTGTGGGGCAATATCGTGTGGGCTCACTCGGTATCACAGGA
species | Oryza sativa |
transcript | LOC_Os02g33110.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88743914|gb|CI765350.1|CI765350
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88744618|gb|CI767978.1|CI767978
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88377617|gb|CI605452.1|CI605452
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88739913|gb|CI761423.1|CI761423
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCCAEST: gi|29634866|gb|CB639875.1|CB639875
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88431051|gb|CI574222.1|CI574222
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|29663240|gb|CB659515.1|CB659515
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88371527|gb|CI602705.1|CI602705
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|58666318|gb|CK055004.1|CK055004
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|29635781|gb|CB640790.1|CB640790
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88763844|gb|CI773260.1|CI773260
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|88371360|gb|CI600208.1|CI600208
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAEST: gi|29635736|gb|CB640745.1|CB640745
genomic: TGAACTGGATCAACGATCCGAACG
EST: TGAACTGGATCAACGATCCGAACG GGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAA
genomic: TGAACTGGATCAACGATCCGAACG
tatacatgaaaaatgttttgagcttttgagttgataagttgagaacattgaacagGGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAGGGAGCTGTGTGGGGCAATATCGTGTGGGCTCACTCGGTATCACAGGA
agttgat putative branch site (score: 5)
atgaaaaatgtttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acccccacccccaccccaaaaaaaaattgggggatccgccccagttatacatgaaaaatgttttgagcttttgagttgataagttgagaacattgaacagGGCCACTGTATTACAAGGGATGGTACCACCTATTCTACCAGTACAACCCCAAGGGAGCTGTGTGGGGCAATATCGTGTGGGCTCACTCGGTATCACAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT