1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
...catacctgggttgtttagcattgcagccttatttacctaaaatcatgccatctctgtatatatttttctgtttgttttttaaaagtgagtttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATCGTCTACTGAAGCCATTTGTGGTGGCAGAGCCTGAAATTCAG
species | Oryza sativa |
transcript | LOC_Os02g15594.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGATGAGCGGAAGAGAATTGAANATGCAGGAGGAGTTGTCATTTGGGCTG GTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATCEST: gi|29639155|gb|CB644164.1|CB644164
genomic: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTGgtaagctaaa ... ttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATC
EST: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTG GTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATCEST: gi|218504110|gb|FG960416.1|FG960416
genomic: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTGgtaagctaaa ... ttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATC
EST: TGATGAGCGGAAGAGAATTGCAAATGCAGGAGGAGTAGTCATTTGGGCTG GTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATCEST: gi|87010644|gb|CI278346.1|CI278346
genomic: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTGgtaagctaaa ... ttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATC
EST: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTG GTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATCEST: gi|38477230|gb|CF961363.1|CF961363
genomic: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTGgtaagctaaa ... ttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATC
EST: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTG GTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATC
genomic: TGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTGgtaagctaaa ... ttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATC
tgccatctctgtatatatttttctgtttgttttttaaaagtgagtttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATCGTCTACTGAAGCCATTTGTGGTGGCAGAGCCTGAAATTCAG
tttattccc CT-rich tract
tgtatatatttttctg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| catacctgggttgtttagcattgcagccttatttacctaaaatcatgccatctctgtatatatttttctgtttgttttttaaaagtgagtttattcccagGTACTTGGAGGGTAGGAGGTGTACTGGCAATGTCGCGTGCATTTGGCAATCGTCTACTGAAGCCATTTGTGGTGGCAGAGCCTGAAATTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- tacctgg
- - - - -gttgttt
- - - - - - - - - - -tgcagcc
- - - - - - - - - - - - - - - - - acctaaa
- - - - - - - - - - - - - - - - - - - - - -catgcca