1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaatttttctctttgattcttacctttccagttctctgttcaccttttttttaaaggttgctaatgattattatcttctcaacttttgaaaaaaaaatcaaaacataacaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATGCCTTCAGGGATGATGGTTCAACAGCTTCCACTGCAGTTTTGGTGGGTGG
species | Oryza sativa |
transcript | LOC_Os02g15594.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: AATCTTCTGGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATGEST: gi|701451|gb|D47742.1|D47742
genomic: AATCTTCT-GAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAAgtaatttttc ... ataacaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATG
EST: AAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAA GTGAA-CATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATGEST: gi|38477230|gb|CF961363.1|CF961363
genomic: AAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAAgtaatttttc ... ataacaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATG
EST: AAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAA GTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATG
genomic: AAATCTTCTGAAACACCCTGAGTTCCTGACAGATACAAAGCTTGCCATAAgtaatttttc ... ataacaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATG
gctaatgattattatcttctcaacttttgaaaaaaaaatcaaaacataacaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATGCCTTCAGGGATGATGGTTCAACAGCTTCCACTGCAGTTTTGGTGGGTGG
aacttttgaaaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatttttctctttgattcttacctttccagttctctgttcaccttttttttaaaggttgctaatgattattatcttctcaacttttgaaaaaaaaatcaaaacataacaacagGTGAAACATATCAGAAAACAGATACAGATTTCTTAGAATCAGAATCCAATGCCTTCAGGGATGATGGTTCAACAGCTTCCACTGCAGTTTTGGTGGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG