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...tcctgtttcaatattttctagttttttttattcagtttatatttgtcttccatacccatccattaacacctaaagattttcacttattcgttttttctagCTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTG
species | Oryza sativa |
transcript | LOC_Os02g15594.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGTAGCAAATGTTGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAG CTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGAEST: gi|218504110|gb|FG960416.1|FG960416
genomic: TGTAGCAAATGTTGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAGgtatgtaaca ... ttttttctagCTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGA
EST: TGTAGCAAATGTAGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAG CTATGGCACTGTCAGAAGATCACAGACCTAACAGGAGTGATGAGCGGAAGAEST: gi|87010644|gb|CI278346.1|CI278346
genomic: TGTAGCAAATGTTGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAGgtatgtaaca ... ttttttctagCTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGA
EST: TGTAGCAAATGTTGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAG CTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGAEST: gi|38477230|gb|CF961363.1|CF961363
genomic: TGTAGCAAATGTTGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAGgtatgtaaca ... ttttttctagCTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGA
EST: TGTAGCAAATGTTGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAG CTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGA
genomic: TGTAGCAAATGTTGGTGATTCCCGTGCTGTTGTTTCAAAAGCTGGTAAAGgtatgtaaca ... ttttttctagCTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGA
tcttccatacccatccattaacacctaaagattttcacttattcgttttttctagCTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTG
ttttcacttattcgtt CT-rich tract
taaagatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcctgtttcaatattttctagttttttttattcagtttatatttgtcttccatacccatccattaacacctaaagattttcacttattcgttttttctagCTATGGCACTGTCAGAAGATCACAAACCTAACAGGAGTGATGAGCGGAAGAGAATTGAAAATGCAGGAGGAGTTGTCATTTGGGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- -tgtttca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -ccatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acctaaa