1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...tatctataatcacattatccgacatttcctctcatgcttgtactcttcttgtgttgctttggaagacatgattatttacttaatctctgattctctgcagAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTG
species | Oryza sativa |
transcript | LOC_Os02g08300.2 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: AGAGAA-AAAGGTCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAG AGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTG
genomic: AGAGAACAAAG-TCAGTGAAGTTGGGTTTTTAGTTGTCATGCTTAGTAAGgtaggccgcg ... ttctctgcagAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTG
ttcttgtgttgctttggaagacatgattatttacttaatctctgattctctgcagAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTG
ctctgat putative branch site (score: 15)
ttctctgc CT-rich tract
atgattatttacttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatctataatcacattatccgacatttcctctcatgcttgtactcttcttgtgttgctttggaagacatgattatttacttaatctctgattctctgcagAGTAAAGCTTCTGGTTCCAGTGGAGCTTTAAGTTCACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - -atgcttg
- - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -acatgat