1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
ACAAGGGTAGCCCTTTCCAATCAGAGGGCATTGTTTGGGGATGTTCAAGGAAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatcaatccccaatttacatttttattgatcctttcttacatattgttctgaactggcattgtgctaaatgtgctaatctattattcaccgaaatttctgcatcccaactttccatgatcatgtttgttttagtttgtgttagtagttagtacaccactacctttcttacacattcttgctacag
species | Oryza sativa |
transcript | LOC_Os02g03450.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88341262|gb|CI640019.1|CI640019
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCGGCAGTGAEST: gi|86499234|gb|CI141867.1|CI141867
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|89169365|gb|CI038374.1|CI038374
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88278944|gb|CI399944.1|CI399944
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88261624|gb|CI365200.1|CI365200
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AGTTCCCTGTTATTAGA-GACTACTT- GTGCCATCAAGA-GAAGAAATCAAAGGACACTATCATCCTTTCAACAGTGAEST: gi|86842651|gb|CI341794.1|CI341794
genomic: AGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88995120|gb|CI036695.1|CI036695
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: GTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|12623227|gb|AU173440.1|AU173440
genomic: GTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88258802|gb|CI359192.1|CI359192
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCACTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86531004|gb|CI171210.1|CI171210
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86532363|gb|CI172569.1|CI172569
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86840566|gb|CI333852.1|CI333852
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAACCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86251162|gb|CI055295.1|CI055295
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88464530|gb|CI534667.1|CI534667
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: TATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
genomic: TATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ACAAGGGTAGCCCTTTCCAATCAGAGGGCATTGTTTGGGGATGTTCAAGGAAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatcaatccccaatttacatttttattgatcctttcttacatattgttctgaactggcattgtgctaaatgtgctaatctattattcaccgaaatttctgcatcccaactttccatgatcatgtttgttttagtttgtgttagtagttagtacaccactacctttcttacacattcttgctacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA