1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
GAGTTCAGGAGGACGAGGGGGAATCTGAGCTCCATCAGGGAGCACGCCGATCTCCTCAGCTCTGTGCGGGACGACATTACTGAGTCCAAGgttcttgcctcaaacccctctacaaaatggtttaactgattaactccacaaaatggttgtaatgtaatgtgctatcgtgttgtgctggcctgattgatcgttgtggttgtctag
species | Oryza sativa |
transcript | LOC_Os02g03450.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AGCACGCCGATCTCCTCAGCTCTGTGCGGGACGACATTACTGAGTCCAAG GCTACTGGCGGCATGTCGCCGAGGGTGCATTTGCTCAGGGAGAGGGCCTCGEST: gi|86499234|gb|CI141867.1|CI141867
genomic: AGCACGCCGATCTCCTCAGCTCTGTGCGGGACGACATTACTGAGTCCAAGgttcttgcct ... ggttgtctagGCTACTGGCGGCATGTCGCCGAGGGTGCATTTGCTCAGGGAGAGGGCCTCG
EST: AGCACGCCGATCTCCTCAGCTCTGTGCGGGACGACATTACTGAGTCCAAG GCTACTGGCGGCATGTCGCCGAGGGTGCATTTGCTCAGGGAGAGGGCCTCGEST: gi|86251162|gb|CI055295.1|CI055295
genomic: AGCACGCCGATCTCCTCAGCTCTGTGCGGGACGACATTACTGAGTCCAAGgttcttgcct ... ggttgtctagGCTACTGGCGGCATGTCGCCGAGGGTGCATTTGCTCAGGGAGAGGGCCTCG
EST: TCTGTGCGGGACGACATTACTGAGTCCAAG GCTACTGGCGGCATGTCGCCGAGGGTGCATTTGCTCAGGGAGAGGGCCTCG
genomic: TCTGTGCGGGACGACATTACTGAGTCCAAGgttcttgcct ... ggttgtctagGCTACTGGCGGCATGTCGCCGAGGGTGCATTTGCTCAGGGAGAGGGCCTCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGTTCAGGAGGACGAGGGGGAATCTGAGCTCCATCAGGGAGCACGCCGATCTCCTCAGCTCTGTGCGGGACGACATTACTGAGTCCAAGgttcttgcctcaaacccctctacaaaatggtttaactgattaactccacaaaatggttgtaatgtaatgtgctatcgtgttgtgctggcctgattgatcgttgtggttgtctag
- - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC