1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaatgtatcaatccccaatttacatttttattgatcctttcttacatattgttctgaactggcattgtgctaaatgtgctaatctattattcaccgaaatttctgcatcccaactttccatgatcatgtttgttttagtttgtgttagtagttagtacaccactacctttcttacacattcttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGATCGCGGCCTGCACCATCTTTTTGATTATTTACTGGCTTTCGAAATGATG
species | Oryza sativa |
transcript | LOC_Os02g03450.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88341262|gb|CI640019.1|CI640019
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCGGCAGTGAEST: gi|86499234|gb|CI141867.1|CI141867
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|89169365|gb|CI038374.1|CI038374
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88278944|gb|CI399944.1|CI399944
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88261624|gb|CI365200.1|CI365200
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AGTTCCCTGTTATTAGA-GACTACTT- GTGCCATCAAGA-GAAGAAATCAAAGGACACTATCATCCTTTCAACAGTGAEST: gi|86842651|gb|CI341794.1|CI341794
genomic: AGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88995120|gb|CI036695.1|CI036695
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: GTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|12623227|gb|AU173440.1|AU173440
genomic: GTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88258802|gb|CI359192.1|CI359192
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCACTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86531004|gb|CI171210.1|CI171210
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86532363|gb|CI172569.1|CI172569
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86840566|gb|CI333852.1|CI333852
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAACCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|86251162|gb|CI055295.1|CI055295
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGAEST: gi|88464530|gb|CI534667.1|CI534667
genomic: AAAAGTCAAGCAGTTGGGTGAAAAGTTCCCTGTTATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
EST: TATTAGAGGACTACTTG GTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
genomic: TATTAGAGGACTACTTGgtaatgtatc ... cttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGA
tagtttgtgttagtagttagtacaccactacctttcttacacattcttgctacagGTGCCATCAAGAGGAAGAAATCAAAGGACACTATCATCCTTTCAGCAGTGATCGCGGCCTGCACCATCTTTTTGATTATTTACTGGCTTTCGAAATGATG
ttcttac putative branch site (score: 25)
ttcttgct putative PPT
tttctta TA-rich tract