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gtgtgtgtttattatttaagtaactgtttctgaatttctcagaaagagcctttattaaattttttatggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAG
species | Oryza sativa |
transcript | LOC_Os01g71590.1 |
intron # | 7 |
splice site | 3' |
intron type | U2 |
EST: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNEST: gi|88839237|gb|CI000709.1|CI000709
genomic: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: GATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAGEST: gi|27554312|gb|CA998212.1|CA998212
genomic: GATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNEST: gi|33801197|gb|CF326472.1|CF326472
genomic: CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: GATTTCTTACAGCGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNNEST: gi|88845066|gb|CI083991.1|CI083991
genomic: GATTTCTTACAGCGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
EST: CGACATAGTTCACAAAG ATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGNNN
genomic: CGACATAGTTCACAAAGgtgtgtgttt ... ggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAA
actgtttctgaatttctcagaaagagcctttattaaattttttatggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAG
aagtaac putative branch site (score: 105)
tttattaaatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtgtgtttattatttaagtaactgtttctgaatttctcagaaagagcctttattaaattttttatggtcatatagATGTAACCAAGGCTGTTGCACAAATGTCTACTTCTCTGCCTGCTGCAGAAAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG