1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GTGCCCAATGTGGAGGTCCTTGCGCGTGTTTCATATATTCTTAAGGAATTCGGGTTTTGCCCTAACGAAGAATACATTGACACCATGATCCTgtactgctctttttgtattcaatataatattttttttctatgcaaatgtttgttgtttattaattatttcttaaacttgttattgaag
species | Oryza sativa |
transcript | LOC_Os01g71590.1 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: AAGGAATTCGGGTTTTGCCCTAACGAAGAATACATTGACACCATGATCCT CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAGEST: gi|27554312|gb|CA998212.1|CA998212
genomic: AAGGAATTCGGGTTTTGCCCTAACGAAGAATACATTGACACCATGATCCTgtactgctct ... gttattgaagCTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG
EST: ACACCATGATCCT CTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG
genomic: ACACCATGATCCTgtactgctct ... gttattgaagCTGTCCATATAACAAGATTTCTTACAGCGACATAGTTCACAAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGCCCAATGTGGAGGTCCTTGCGCGTGTTTCATATATTCTTAAGGAATTCGGGTTTTGCCCTAACGAAGAATACATTGACACCATGATCCTgtactgctctttttgtattcaatataatattttttttctatgcaaatgtttgttgtttattaattatttcttaaacttgttattgaag
- - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA