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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtggcaatgaattgaatcaggtctgcctcctgcatttattattggtccagcattcttttattctgtttttggaacatggctaacccacttttt...

Basic information

species Oryza sativa
transcript LOC_Os01g71300.1
intron # 6
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|313081136|gb|HO213722.1|HO213722
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88564000|gb|CI494717.1|CI494717
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGA
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGA-GGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGA
EST: gi|88462122|gb|CI504620.1|CI504620
EST:     TTCTGATT-ACCNAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTTTACCTCGCAACTTTGA
genomic: TTCTGATTGACC-AGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGA
EST: gi|33793936|gb|CF322856.1|CF322856
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88533769|gb|CI460431.1|CI460431
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88287827|gb|CI510107.1|CI510107
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTTTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88564892|gb|CI495609.1|CI495609
EST:     CCTGATCAAGGAGTGCAACCAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATNACAAATTTCTGGCAAAGCAGCTTGTACCTCGCAACTTTGAG
genomic: CCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88252124|gb|CI350552.1|CI350552
EST:     CTGATCAAGAAGGTGCAACAAAATTTCAACTCCTATTCTGATTGAGCCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTGTACCTCGCAACTTTGA
genomic: CTGATCAAGAA-GTGCAACAAAATTTCAACTCCTATTCTGATTGA-CCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGA
EST: gi|3763476|gb|AU030228.1|AU030228
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGNTGACAAA-TTCTGGCAAAGCAGCTTCTACTTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86522305|gb|CI162511.1|CI162511
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|58678471|gb|CK067158.1|CK067158
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86523061|gb|CI163267.1|CI163267
EST:     ACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTGTACCTCGCAACTTTGAG
genomic: ACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88201956|gb|CI202311.1|CI202311
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88565243|gb|CI495960.1|CI495960
EST:     CAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCANAGCAGCTTCTACCTCGCAACTTTGAG
genomic: CAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86825707|gb|CI361840.1|CI361840
EST:     CTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: CTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88526314|gb|CI452445.1|CI452445
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|29616411|gb|CB621423.1|CB621423
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88373851|gb|CI508470.1|CI508470
EST:     CAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: CAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88215812|gb|CI215661.1|CI215661
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88419036|gb|CI508989.1|CI508989
EST:     GCCTGATCAAGAANTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATNACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88563805|gb|CI494522.1|CI494522
EST:     GCCTGATCAAGAAGTGCCACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88218831|gb|CI216829.1|CI216829
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88837009|gb|CI008445.1|CI008445
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88213104|gb|CI212768.1|CI212768
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|89166731|gb|CI104017.1|CI104017
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|163921069|gb|EG710132.1|EG710132
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88548642|gb|CI476457.1|CI476457
EST:     GCCTGATCAAGAAGTGCAACACAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88846218|gb|CI372986.1|CI372986
EST:     TGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: TGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88562044|gb|CI492761.1|CI492761
EST:     AGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: AGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88564508|gb|CI495225.1|CI495225
EST:     ATCAAGAAGTGCAACCAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAACCAGCTTCTACCTCGCAACTTTGAG
genomic: ATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86513942|gb|CI156575.1|CI156575
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88201927|gb|CI202282.1|CI202282
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|58601416|gb|CK011944.1|CK011944
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|218484537|gb|FG954358.1|FG954358
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88977256|gb|CI024993.1|CI024993
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88205446|gb|CI205295.1|CI205295
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86546598|gb|CI186804.1|CI186804
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86252680|gb|CI010162.1|CI010162
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86884561|gb|CI337129.1|CI337129
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88958572|gb|CI096088.1|CI096088
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86497871|gb|CI140504.1|CI140504
EST:     ATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: ATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86847224|gb|CI285260.1|CI285260
EST:     TCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: TCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88565230|gb|CI495947.1|CI495947
EST:     CAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: CAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|2443065|gb|C74836.1|C74836
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86594394|gb|CI251266.1|CI251266
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAAAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86490058|gb|CI132691.1|CI132691
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|87032354|gb|CI264135.1|CI264135
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88969159|gb|CI382708.1|CI382708
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTGTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88202985|gb|CI202834.1|CI202834
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|86496146|gb|CI138779.1|CI138779
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
EST: gi|88967655|gb|CI016170.1|CI016170
EST:     GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAG                         GGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG
genomic: GCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 69 (upstream exon), 73 (downstream exon)
Score: 111

GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtg ... acttgagcagGGAGAGGATGACAAATTTCTGGCAAAGCAGCTTCTACCTCGCAACTTTGAGGAGGCGTGCAAGGCTGTGGGAGCTCCTTTGACTCTCCGCATGCAACCTG




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Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTATTCTGATTGACCAGgtatgacgtggcaatgaattgaatcaggtctgcctcctgcatttattattggtccagcattcttttattctgtttttggaacatggctaacccacttttt

- - - - - - - - - - - - AAGAAG
- - - - - - - - - - - -  AGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctgcctcc