1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
CGGCGGCCACAACCTCCGCTTCCGCCACCACAGCGCCACGCTCGGCTGCCCCATGACCTTCTCCGTCTTCCTCCCGCCGTCGCCGGCATCCGACCTCCCCgtaagtgctcctccgcctcgtctcctcctccgcctcgagatctgatgaggggtttcgcatgctaccgcgtggttgtgcgcag
species | Oryza sativa |
transcript | LOC_Os01g71300.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGCATCCGACCTCCCC GTGCTGTACTGGCTCTCCGGCCTCACGTGCAACGACGAGAACTTCGTCACCEST: gi|58591479|gb|CF989787.1|CF989787
genomic: GGCATCCGACCTCCCCgtaagtgctc ... ttgtgcgcagGTGCTGTACTGGCTCTCCGGCCTCACGTGCAACGACGAGAACTTCGTCACC
EST: CCATGACCTTCTCCGTCTTCCTCCCGCCGTCGCCGGCATCCGACCGGGCC GTGCTGTACTGGCTCTCCGGCCTCACGTGCAACGACGAGAACTTCGTCACCEST: gi|58604050|gb|CK014578.1|CK014578
genomic: CCATGACCTTCTCCGTCTTCCTCCCGCCGTCGCCGGCATCCGACCTCCCCgtaagtgctc ... ttgtgcgcagGTGCTGTACTGGCTCTCCGGCCTCACGTGCAACGACGAGAACTTCGTCACC
EST: CCATGACCTTCTCCGTCTTCCTCCCGCCGTCGCCGGCATTCGACCTCCCC GTGCTGTACTGGCTCTCCGGCCTCACGTGCAACGACGAGAACTTCGTCACC
genomic: CCATGACCTTCTCCGTCTTCCTCCCGCCGTCGCCGGCATCCGACCTCCCCgtaagtgctc ... ttgtgcgcagGTGCTGTACTGGCTCTCCGGCCTCACGTGCAACGACGAGAACTTCGTCACC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGCGGCCACAACCTCCGCTTCCGCCACCACAGCGCCACGCTCGGCTGCCCCATGACCTTCTCCGTCTTCCTCCCGCCGTCGCCGGCATCCGACCTCCCCgtaagtgctcctccgcctcgtctcctcctccgcctcgagatctgatgaggggtttcgcatgctaccgcgtggttgtgcgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -CGTCGCCG