1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
TCGGTGTCTGCATTCTCTCCGGTTGTCAATCCAATCAACTGCCCTTGGGGTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctctgtagagacaaaatctctctcttgctcagtccttcacctcaccctcgtggcctcgctctccctcacacattgttgtacctaactgcag
species | Oryza sativa |
transcript | LOC_Os01g71300.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGGAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|33793936|gb|CF322856.1|CF322856
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88252124|gb|CI350552.1|CI350552
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGGTGCAACAAAATTTCAACTCCEST: gi|86522305|gb|CI162511.1|CI162511
genomic: GGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAA-GTGCAACAAAATTTCAACTCC
EST: TAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|58678471|gb|CK067158.1|CK067158
genomic: TAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88201956|gb|CI202311.1|CI202311
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: AAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|33793279|gb|CF322520.1|CF322520
genomic: AAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|29616411|gb|CB621423.1|CB621423
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGGAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88215812|gb|CI215661.1|CI215661
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: ATCAGATTGGAAG GAATATAATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88837009|gb|CI008445.1|CI008445
genomic: ATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: AATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88213104|gb|CI212768.1|CI212768
genomic: AATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|89166731|gb|CI104017.1|CI104017
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|163921069|gb|EG710132.1|EG710132
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|86513942|gb|CI156575.1|CI156575
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88201927|gb|CI202282.1|CI202282
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|58601416|gb|CK011944.1|CK011944
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|218484537|gb|FG954358.1|FG954358
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88977256|gb|CI024993.1|CI024993
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88205446|gb|CI205295.1|CI205295
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: TCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|86252680|gb|CI010162.1|CI010162
genomic: TCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|86884561|gb|CI337129.1|CI337129
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: TCAGATTGGAAG GAATATGATCCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88958572|gb|CI096088.1|CI096088
genomic: TCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|2443065|gb|C74836.1|C74836
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|86594394|gb|CI251266.1|CI251266
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|86490058|gb|CI132691.1|CI132691
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAGTCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|87032354|gb|CI264135.1|CI264135
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88202985|gb|CI202834.1|CI202834
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|86496146|gb|CI138779.1|CI138779
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCTEST: gi|88967655|gb|CI016170.1|CI016170
genomic: GCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
EST: GTCAGAAAGCATTCTCCAACTATTTGGGCCCAGCTAAATCAGATTGGAAG GAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
genomic: GTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctc ... ctaactgcagGAATATGATGCAACCTGCCTGATCAAGAAGTGCAACAAAATTTCAACTCCT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCGGTGTCTGCATTCTCTCCGGTTGTCAATCCAATCAACTGCCCTTGGGGTCAGAAAGCATTCTCAAACTATTTGGGCCCAGCTAAATCAGATTGGAAGgtaattcctctgtagagacaaaatctctctcttgctcagtccttcacctcaccctcgtggcctcgctctccctcacacattgttgtacctaactgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG