1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagctcctgtttttgagttgtctgcactctgcaccgtttagttaagctgtggtttatcactgaagtattagactattttcatatgtaaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG
species | Oryza sativa |
transcript | LOC_Os01g70960.2 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATGAAGATGGCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|89168991|gb|CI020531.1|CI020531
genomic: ATGAAGATGGCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|27920999|gb|CB096807.1|CB096807
genomic: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|88222829|gb|CI220894.1|CI220894
genomic: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: TGAAGATGGCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|86502387|gb|CI145020.1|CI145020
genomic: TGAAGATGGCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|86433950|gb|CI094293.1|CI094293
genomic: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: ACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|86508914|gb|CI151547.1|CI151547
genomic: ACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: GCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|86418967|gb|CI053768.1|CI053768
genomic: GCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGEST: gi|87029581|gb|CI257376.1|CI257376
genomic: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
EST: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAG ATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
genomic: TTGATGGAGCAGTCGAGTATGAAGATGGCACTCCAGCTACAGAAGCCCAGgtagctcctg ... taaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATG
gttaagctgtggtttatcactgaagtattagactattttcatatgtaaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG
tattttcatatgtaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagctcctgtttttgagttgtctgcactctgcaccgtttagttaagctgtggtttatcactgaagtattagactattttcatatgtaaattgtagATGGGAAAAGATGTTGTCTCGTTCTTGTCATGGGCGGCGGAGCCTGAGATGGAAGAGAGAAAACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA